Hi Suda, You can do this in Coot by loading the two structures, then using the tool Calculate-----> SSM superpose.
The rmsd value and sequence identity should be reported within your terminal window. Hope that helps. -Joe Date: Thu, 18 Aug 2011 14:40:32 +0530 From: biobud...@gmail.com Subject: [ccp4bb] structure based superposition To: CCP4BB@JISCMAIL.AC.UK Dear all, I would like to know the tools/servers/programs that can be used for structure based superposition of two or more proteins. Please help me out..!! Thanks, -Suda