Dear Maher, as far as I know pymol uses the APBS (http://www.poissonboltzmann.org) for the calculations and your question is answered in the FAQ: http://www.poissonboltzmann.org/apbs/frequently-asked-questions/what-are-the-units-of-electrostatic-potential (kT/e)
I don't know if this also answers your second question, but you could let us know in case it does. Tim On Wed, May 25, 2011 at 03:58:17PM -0700, Maher Alayyoubi wrote: > Hi everyone, I have two questions: > > 1- Does anybody know what are the units on the display ruler after you > calculate the vaccum electrostatics using pymol? > > 2- What are the default kT/e values used by pymol? > > Thank you, > > > > > Maher -- -- Tim Gruene Institut fuer anorganische Chemie Tammannstr. 4 D-37077 Goettingen phone: +49 (0)551 39 22149 GPG Key ID = A46BEE1A
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