1. Yes, just "Save Molecule" (individually) after align
2. > show stick, xxxx&HETATM around 4
(xxxx is your pdb name, 4 = 4 angstrom)
On Wed, May 4, 2011 at 3:26 PM, jlliu liu <jlliu20022...@gmail.com> wrote:
> Hi All,
>
> I have two questions for Pymol.
>
> 1. Can you write out the PDB file after structural alignment?
> 2. How to only show structure that is several angstrom from the ligand?
>
> Thanks a lot in advance!
>
> Eric
>
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Matthew L.H. Chu, PhD
Postdoctoral Scholar - Weis Lab
Department of Structural Biology
Stanford School of Medicine
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