Dear Mohd, FYI: there is specific mailing list for PHENIX specific questions ( http://phenix-online.org/).
Pavel. On Tue, Apr 26, 2011 at 10:56 AM, Salameh, Mohd A., Ph.D. < salameh.m...@mayo.edu> wrote: > Dear All, > > I normally refine my structure without the hydrogens until the final stages > . But today I’m facing a real trouble with phenix.refine!! It seems > phenix.refine does not recognize the hydrogen atoms and writes out this > message: “Fatal problems interpreting PDB file: number of atoms with > unknown nonbonded energy type symbols: 1420 … “. After comparing this PDB > and previous PDB files with added H I can see some format changes but I > doubt it to be the problem! > > I wonder if anyone had encountered similar problem and have any suggestion > that can help overcoming this annoying trouble. > > Many Thanks > > Mohd > >
