Hi, Swiss-pdb viewer works well for small peptides, you can check if it serves your objective too... Even WHAT IF provides clues to bond angles, bond length and torsion angles.
Gauri On Thu, Mar 10, 2011 at 3:56 PM, Robert Immormino <immorm...@gmail.com>wrote: > Hi Halliang, > If the ligands are in the pdb het dictionary I think MolProbity will > look at bonds and angles...maybe even dihedrals. > Cheers, > -bob > > On Thu, Mar 10, 2011 at 12:23 PM, Hailiang Zhang <zhan...@umbc.edu> wrote: > > Hi there, > > > > I want to found some bad geometry for my ligand (sugar rings). The > > procheck .out file seems only shows the bad bond length or angles for > > protein. Is there any way we can get these information for sugar rings? > > > > Thanks in advance! > > > > Hailiang > > >
