Hi Cale, My advice would be to find someone local with experience in scripting possibly in python or perl. This is a tractable problem with a bit of scripting and if you aren't already experienced this may be a good opportunity to delve into a bit of programing. Good Luck, -bob
On Tue, Mar 8, 2011 at 7:20 PM, Cale Dakwar <c.dak...@gmail.com> wrote: > Thanks for the quick reply. This is a very good resource but not quite what > I need. As far as I can tell, this resource is based on a dataset from > 10-08-1998 and then only included x-ray crystal structure with better than 2 > angstrom data. I also can't in this database a mention of the PDB > structures in which e.g. the shortest His-His distances have been observed. > - C > > On Tue, Mar 8, 2011 at 6:19 PM, Ed Pozharski <epozh...@umaryland.edu> wrote: >> >> On Tue, 2011-03-08 at 17:44 -0500, Cale Dakwar wrote: >> > Amongst other things, I want e.g. generate a histogram from this table >> > and determine e.g. the shortest HisND1 pair distance observed and the >> > structure in which this happens. >> >> For this specific question this can be useful >> >> http://www.biochem.ucl.ac.uk/bsm/sidechains/index.html >> >> >> >> -- >> "I'd jump in myself, if I weren't so good at whistling." >> Julian, King of Lemurs >> > >
