Hi all,
(apologies if sounds off-topic) I have a list of pdb id's of the form 1XXX:Y (that is code:chain id). Is there a way to map this format to get uniprot id's for the entire list. I can use ID mapping in Uniprot but it takes only the code and not the above format. Although it gives the Uniprot id's for all the chains of pdb's containing multiple chain id's/different proteins I'm trying to avoid going back to the original list and manually delete hundreds id's I'm not interested in! (for eg. If I give a code 1XXX which has two chains A and B, I'm interested in getting the uniprot id of only A) Any help is much appreciated. Thanks. Kind regards, Sid. ---------------------------------- Sudharsan Sridharan, Ph.D. Scientist I Structural Bioinformatics, Protein Sciences, Lead Generation Department of Antibody Discovery and Protein Engineering MedImmune* Aaron Klug Building, Granta Park, Cambridge, CB21 6GH, UK. Direct line: +44 (0) 1223 898195 Facsimile: +44 (0) 1223 471472 Email: sridhar...@medimmune.com <mailto:sridhar...@medimmune.com> Web: www.medimmune.com <http://www.medimmune.com/> *MedImmune Limited (formerly Cambridge Antibody Technology Limited) Registered Office: Milstein Building, Granta Park, Cambridge, CB21 6GH, UK. Registered in England and Wales number 2451177 Confidentiality Note: This information and any attachments is confidential and only for use by the individual or entity to whom it has been sent. Any unauthorised dissemination, distribution or copying of this message is strictly prohibited. If you are not the intended recipient please inform the sender immediately by reply e-mail and delete this message from your system. Thank you for your co-operation. We may monitor or record emails to or from MedImmune. E-mails may contain viruses or other harmful software that may damage your system. Whilst we have tried to eliminate such viruses and other harmful software we cannot accept liability for any damage caused to your system by any that remain. It is your responsibility to protect your system and you are advised to carry out your own checks on e-mails from us. To the extent this electronic communication or any of its attachments contain information that is not in the public domain, such information is considered by MedImmune to be confidential and proprietary. This communication is expected to be read and/or used only by the individual(s) for whom it is intended. If you have received this electronic communication in error, please reply to the sender advising of the error in transmission and delete the original message and any accompanying documents from your system immediately, without copying, reviewing or otherwise using them for any purpose. Thank you for your cooperation.
