This was one of the things that Indonesia was written for (a long time ago, in
a galaxy far, far away), although I'm not sure if it will still run. If you're
desperate, see http://xray.bmc.uu.se/~dennis/
--Gerard
On Fri, 26 Nov 2010, Muhammed bashir Khan wrote:
Dear All;
I have structures of two protein one full-length while the other truncated
at the c-terminus(one from prokaryote while the other from eukaryotes).
Now I want to do the sequence alignment of these two proteins from all
species in such a way that the structure based sequence remain constant
while extending the sequence only at the c-terminus. Remember the
structure are known only for the two proteins.
Any suggestion will be highly appreciated!!!!!
Regards and have a nice weekend.
Bashir
Best wishes,
--Gerard
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Gerard J. Kleywegt
Dept. of Cell & Molecular Biology University of Uppsala
Biomedical Centre Box 596
SE-751 24 Uppsala SWEDEN
http://xray.bmc.uu.se/gerard/ mailto:[email protected]
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