Perhaps Section 7.9.1 might be of some use?
http://lmb.bioch.ox.ac.uk/coot/doc/coot/Validation-Graphs.html#Validation-Graphs
Cheers,
Paul.
On 28/11/10 06:14, Albert Guskov wrote:
I noticed the same problem on Mac OSX (snow leopard) . Seems to be an
issue for all phenix installation packages for current release.
On Sunday, November 28, 2010, Tanner, John J.<tanne...@missouri.edu> wrote:
Has anyone encountered the following problem when using Coot (coot-0.6.2pre)
validate density fit analysis with an mtz file calculated using phenix.refine
(1.6.4)?
All of the density fit values are exactly 0.0 (all bars same height and red)
when using a 2Fo-Fc map calculated from an mtz file output by PHENIX Version:
1.6.4, Release tag: 486, Platform: intel-linux-2.6 redhat-e5.5. Density fit
analysis worked fine when I was using mtz files from PHENIX Version: 1.6.2,
Release tag: 432, Platform: intel-linux-2.6 redhat-e5.5. Thus, it appears to
be an issue with the new version of phenix. I should mention that the maps
from 1.6.4 mtz files display fine in Coot and real space refinement against
those maps in Coot works fine too. It is just the density fit analysis utility
that seems to be problematic.
