Dear All, Thanks for your suggestions! I ended up using the areaimol program in ccp4.
My next question: Given a list of accessible surface area, is there a generally accepted value of ASA above which a residue classifies as a surface residue, while below this number it is an interior residue? Thanks! and all the best, --Buz On Nov 2, 2010, at 10:56 AM, Tim Gruene wrote: > Hello Buz, > > I do not know what you mean by 'linear map', but according to its manual, the > ccp4-program "surface" writes a list of accessible are per atom per residue, > which you could convert into the total fraction per residue with not too much > effort. > > Is this what you are looking for? > > Cheers, Tim > > On Tue, Nov 02, 2010 at 10:36:56AM -0400, Buz Barstow wrote: >> Dear All, >> >> I'm looking for a software program to produce, given a 3D atomic structure >> of a molecule, a linear map showing the surface accessibility of residues in >> a protein structure. >> >> Would any one know of a program that can produce this sort of map. >> >> Thanks! and all the best, >> >> --Buz > > -- > -- > Tim Gruene > Institut fuer anorganische Chemie > Tammannstr. 4 > D-37077 Goettingen > > phone: +49 (0)551 39 22149 > > GPG Key ID = A46BEE1A >
