Dear colleagues,
many thanks for all of your kind support, following my request about
placing dummy atoms into en EM-map! Here is a short summary:
Frederic Vellieux kindly offered me to use his programs with clever
positioning of atoms in a density.
Paul Emsley pointed to a program "findwaters", that comes with Coot,
with option "--flood" to fill a density with waters.
John Tanner pointed to a USF program FLOOD from the VOIDOO packages for
filling cavities with water.
Victor Lamzin sent me a script for ARP/wARP for placing dummy atoms into
a map.
Alex Shkumatov pointed to two SAXS programs, em2dam and vol2pdb, to
convert low resolution maps into dummy atoms.
Now, I have plenty of options to play with!
Best regards,
Dirk.
Am 13.10.10 13:49, schrieb Dirk Kostrewa:
... maybe, to clarifiy my question a little bit: I want to fill an
essentially flat cryo-EM-map with dummy atoms. So, a peak search
doesn't work. I would need a program that fills this map with dummy
atoms for a few things that I want to try with this "atomic"
representation.
Best regards,
Dirk.
Am 13.10.10 13:00, schrieb Dirk Kostrewa:
Dear CCP4ers,
is there a program around that allows to fill an input map or mask
with dummy atoms?
Best regards,
Dirk.
--
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Dirk Kostrewa
Gene Center Munich, A5.07
Department of Biochemistry
Ludwig-Maximilians-Universität München
Feodor-Lynen-Str. 25
D-81377 Munich
Germany
Phone: +49-89-2180-76845
Fax: +49-89-2180-76999
E-mail: kostr...@genzentrum.lmu.de
WWW: www.genzentrum.lmu.de
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