I got VOIDOO to work by editing the library file, mine was only reading
protein.
To make it read the bases, I added this lines to the file:
RESI 'THR' (example)
RESI ' DA'
RESI ' DT'
RESI ' DC'
RESI ' DG'
Thank you Eric for the web site.
vincent
Eric Pettersen wrote:
Hi,
I would like to measure the volume of a protein-DNA complex.
I'm using VOIDOO but it only gives me the volume of the protein.
Does anybody know of a software that allows calculation of DNA volume
too?
The StrucTools server (http://helixweb.nih.gov/structbio/basic.html)
can calculate the Voronoi volume of a molecule.
--Eric
Eric Pettersen
UCSF Computer Graphics Lab
http://www.cgl.ucsf.edu
--
Vincent Chaptal
Dept. of Physiology at UCLA
http://www.physiology.ucla.edu/Labs/Abramson/index.html
<http://www.physiology.ucla.edu/Labs/Abramson/index.html/>
Phone: 1-310-206-1399
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