Ni hao,
(1) Will "re m2 msk.mask ccp4" instead of "re m2 msk.mask mask" affect the results?
Well, that depends entirely on what's in the file! The last parameter is your way of telling the program what the format of the file is. "Mask" means one of the MAMA-supported mask formats - "ccp4" means a CCP4 *map* (reading of CCP4 *masks* is not supported, so if it's that, the results are unpredictable). If you haven't already done so, I would recommend that you (a) generate the mask with MAMA and then use the "mask" format to write/read it, and (b) that you support the Netherlands in the World Cup final tomorrow night.
--Gerard ****************************************************************** Gerard J. Kleywegt Dept. of Cell & Molecular Biology University of Uppsala Biomedical Centre Box 596 SE-751 24 Uppsala SWEDEN http://xray.bmc.uu.se/gerard/ mailto:ger...@xray.bmc.uu.se ****************************************************************** The opinions in this message are fictional. Any similarity to actual opinions, living or dead, is purely coincidental. ******************************************************************