Dear Carsten, thank you for the instruction. The cctbx package seems to lack tkinter which is required by pymol (and maybe numpy, too). How do I install a specific python module (package? what's the correct term?) 'under' cctbx.python?
Cheers, Tim On Wed, Jun 23, 2010 at 09:07:36AM -0400, Schubert, Carsten [PRDUS] wrote: > Tim, > > I'm shooting from the hip here, but I think the problem is that cctbx > comes with its own python, which you would need to run both pymol and > numpy under. According to Ralf it is at least not trivial to utilize the > system python to run cctbx. So I think you need to compile/install pymol > against cctbx.python and install it as a module under cctbx.python. > Similar deal for numpy, which may already be available in cctbx, if not > installation should be straightforward. > > These broad steps may work (again shooting from the hip...) > -Install cctbx > -link cctbx.python to python and make sure its first in your path (may > be optional) > -install numpy under cctbx.python (if not already present) > -compile and install open.pymol against the cctbx.python, either via the > renaming trick > above or calling cctbx.python setup.py (build/install) > > Good luck, let us know how it works... > > Carsten > > > > > -----Original Message----- > > From: CCP4 bulletin board [mailto:ccp...@jiscmail.ac.uk] On Behalf Of > > Tim Gruene > > Sent: Wednesday, June 23, 2010 8:35 AM > > To: CCP4BB@JISCMAIL.AC.UK > > Subject: [ccp4bb] pymol python and cctbx > > > > Dear all, > > > > I've been trying to install the SuperSym module for pymol (svn trunk > > version of pymol as of today, 1.3.x). Upon restart the console says > > "Ooops! SuperSym requires cctbx and numeric python to function. > Please > > install these." > > > > The system is i7 with Debian Testing 64bit with python2.5 (although > > python2.6 is also installed but not the default). cctbx was installed > > using cctbx_fedora8_x86_64_py265_inc.selfx and the installation output > > did not imply any issues, e.g. about the wrong python version (and I > > did only find cctbx packages for python 2.6.5 on their web site). > > > > python-numpy is install which I believe is the "numeric python" the > > module output complains about. > > > > Would anyone be so kind to direct someone who despises python (phyuuu, > > that > > helped...) to how to get the SuperSym module to work with pymol? A > > start would be if the module would tell me whether it complains about > > missing numeric python or cctbx or both. > > > > Do I have to compile pymol with python2.6? Just starting pymol with > > python2.6 did not change anything. > > > > Thanks a lot, Tim > > > > > > -- > > Tim Gruene > > Institut fuer anorganische Chemie > > Tammannstr. 4 > > D-37077 Goettingen > > > > GPG Key ID = A46BEE1A -- -- Tim Gruene Institut fuer anorganische Chemie Tammannstr. 4 D-37077 Goettingen GPG Key ID = A46BEE1A
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