Hi Jan The "IMAGE " command turns the old gui on - always has done, as far as I know.
With "Strategy auto" you shouldn't need to give an image number. HTH On 28 May 2010, at 14:35, Jan Abendroth wrote: > Hi all, > I have been trying to use mosflm in script mode, in a quick-n-dirty effort to > pipe some information from labelit.index into a simple data collection > strategy. While doing that, I run into the following issue. I have not been > able to find a way to read in image information without starting the old gui. > Is there a command in the current mosflm versions to run it in shell mode > only? Below the script that I have been using. > Any ideas? > > Thanks > Jan > > > --- > ipmosflm summary integrate02.sum <<eof > DIRECTORY ../images > TEMPLATE image_###.img > IMAGE 1 > HKLOUT integration02.mtz > GENFILE integration02.gen > #detector-take defaults > > #UIS_PIXEL 0.102400 > #UIS_SIZE 3072 > > NUSPOT OFF > BEAM 155.400500 158.807700 > DISTANCE 299.775600 > TWOTHETA 0.0 > > WAVE 0.977400 > #beam > SYNCHROTRON POLARIZATION 0.9 > DIVERGENCE 0.100 0.020 > DISPERSION 0.0001 > > > MOSAICITY 0.60 > SYMMETRY p2 > RESOLUTION 3.5 > MATRIX integration02.mat > > PROFILE OVERLOAD PARTIALS > RASTER 19 19 9 4 4 > SEPARATION 1.80 1.80 CLOSE > REFINEMENT RESID 7.5 > REFINEMENT INCLUDE PARTIALS RESID 10.0 #High s/n > > > scanner adsc > strategy auto > stats on > go > end > exit > eof > > > -- > Jan Abendroth > Emerald BioStructures > Seattle / Bainbridge Island WA, USA > home: Jan.Abendroth_at_gmail.com > work: JAbendroth_at_embios.com > http://www.emeraldbiostructures.com > > > > > > Harry -- Dr Harry Powell, MRC Laboratory of Molecular Biology, MRC Centre, Hills Road, Cambridge, CB2 0QH
