Another software to use is Theseus, which does very good maximum
likelihood superpositions, and you can get the PCA for free, same as
CA rmsd lists, the NxN matrix with differences, an "average" model
with pseudo-B-factors, etc. Personally I use Rapido/ESCET and Theseus,
depending on the question ... (as Nicholas hints...)
A.
On Apr 29, 2010, at 19:18, Jacob Keller wrote:
Dear Crystallographers,
I am looking at ~20 unique crystal structures of the same protein in
somewhat different conformations, although not radically different,
and
would like to order them somehow to gain an understanding of how the
protein
can move. Is there software that does this somewhat automatically?
Thanks for your consideration,
Jacob Keller
*******************************************
Jacob Pearson Keller
Northwestern University
Medical Scientist Training Program
Dallos Laboratory
F. Searle 1-240
2240 Campus Drive
Evanston IL 60208
lab: 847.491.2438
cel: 773.608.9185
email: j-kell...@northwestern.edu
*******************************************
P please don't print this e-mail unless you really need to
Anastassis (Tassos) Perrakis, Principal Investigator / Staff Member
Department of Biochemistry (B8)
Netherlands Cancer Institute,
Dept. B8, 1066 CX Amsterdam, The Netherlands
Tel: +31 20 512 1951 Fax: +31 20 512 1954 Mobile / SMS: +31 6 28 597791
