> Only problem, using pymol or Chimera, the 3D only works in the lower half of
> the screen...
> In the top half, we see the two images superimposed and they are not
> separated by the shutter glasses.

Surprised you got it that far.

> We are running it under windows. We couldn't get it to work with the linux
> beta driver. The graphics card is an Nvidia FX4500.

It's not supposed to work in windows or linux with the quadro fx 4500.
You need a quadro card with a  G8x core or better, e.g. quadro 370 for
windows and quadro 3700 for linux or windows, see:

http://www.pymolwiki.org/index.php/Stereo_3D_Display_Options

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