Dear Victor, I faced the same problem and got the same error for arpwarp solvent module, and I have even communicated you through my system admin for arp warp classic module giving some trouble.
sincerely S.Jayashankar Research Student Institute for Biophysical Chemistry Hannover Medical School Germany. On Fri, Mar 5, 2010 at 7:40 PM, Victor Lamzin <vic...@embl-hamburg.de>wrote: > Dear Madravi, > > Probably the buffer was not flashed out to the log file. > > Does the error stay if you run it from the command line, > $warpbin/auto_solvent.sh ? > > Best regards, > Victor > > > > Nalam, Madhavi wrote: > >> Hello: >> I am using CCP4i version 6.1.2 >> >> I am trying to run the job ARP/wARP solvent building within CCP4. I used >> the default values for running the job. The log file after the run is pasted >> below. >> >> I looked in the file (sm14b_unique1_warp_solvent_last.log) for an error >> message but the file is empty. Can anyone suggest what/where I should be >> looking into? >> Thanks, >> Madhavi >> -------------------- >> 5 ARP refinement cycles will be run in total >> Atoms will be removed if below 1.0 sigmas in 2mFoDFc map >> Atoms will be added if above 3.4 sigmas in mFoDFc map >> >> Refmac Refinement Parameters: >> 1 REFMAC cycle(s) in each ARP cycle >> Weight for restraints is set to AUTO >> Scaling protocol SIMPLE LSSC ANIS >> FreeR will be used for monitoring and sigmaa calculations >> >> >> QUITTING ... ARP/wARP module stopped with an error message: >> REFMAC5 >> >> *** Look for error message in the file: >> sm14b_unique1_warp_solvent_last.log >> >> [1] 6836 >> >> #CCP4I TERMINATION STATUS 1 #CCP4I TERMINATION TIME 05 Mar 2010 11:00:42 >> #CCP4I TERMINATION OUTPUT_FILES >> /home/nalamm/angie/struc_soln/6_arp_warp_solvent.par angie >> #CCP4I MESSAGE Task completed successfully >> >> >> >
