I think the space-group and cell are missing: It should be something like: (transform-map imol rotation-matrix trans point radius space-group cell)
i.e. in your example, say: (transform-map 13 (list 0.9956 -0.08709 -0.03537 -0.08702 -0.9962 0.003531 -0.03554 -0.0004371 -0.9994) (list 1.235 1.005 0.1625) (list 11.6806 -8.6401 -14.960) 10 "P 21 21 21" (list 45 100 39 90 90 90)) or some such. But are you sure you actually need this? -- Extensions->Maps->Transform map by LSQ does something similar... JED. (Oh, the coot documentation is misleading... shock horror!) -------------------------------------------------------------------------- AstraZeneca UK Limited is a company incorporated in England and Wales with registered number: 03674842 and a registered office at 15 Stanhope Gate, London W1K 1LN. Confidentiality Notice: This message is private and may contain confidential, proprietary and legally privileged information. If you have received this message in error, please notify us and remove it from your system and note that you must not copy, distribute or take any action in reliance on it. Any unauthorised use or disclosure of the contents of this message is not permitted and may be unlawful. Disclaimer: Email messages may be subject to delays, interception, non-delivery and unauthorised alterations. Therefore, information expressed in this message is not given or endorsed by AstraZeneca UK Limited unless otherwise notified by an authorised representative independent of this message. No contractual relationship is created by this message by any person unless specifically indicated by agreement in writing other than email. Monitoring: AstraZeneca UK Limited may monitor email traffic data and content for the purposes of the prevention and detection of crime, ensuring the security of our computer systems and checking Compliance with our Code of Conduct and Policies. -----Original Message----- From: CCP4 bulletin board [mailto:ccp...@jiscmail.ac.uk] On Behalf Of Rana Refaey Sent: 08 February 2010 14:42 To: CCP4BB@JISCMAIL.AC.UK Subject: [ccp4bb] Map transformation Hi all, I am trying to use the transform map command in coot but i am getting the following error 6:19: In expression (0.9956 -0.08709 -0.03537 ...)::6:19: Wrong type to apply: 0.9956 the command that i used was: (transform-map 13 (0.9956 -0.08709 -0.03537 -0.08702 -0.9962 0.003531 -0.03554 -0.0004371 -0.9994) (1.235 1.005 0.1625) (11.6806 -8.6401 -14.960) 10) i have also added the word list before each group of numbers, (transform-map 13 (list 0.9956 -0.08709 -0.03537 -0.08702 -0.9962 0.003531 -0.03554 -0.0004371 -0.9994) (list 1.235 1.005 0.1625) (list 11.6806 -8.6401 -14.960) 10) and i got the following error, arguments to transform-map incomprehensible: args: (13 (0.9956 -0.08709 -0.03537 -0.08702 -0.9962 0.003531 -0.03554 -4.371e-4 -0.9994) (1.235 1.005 0.1625) (11.6806 -8.6401 -14.96) 10) I am not sure what i am doing wrong, could you please point me in the right direction ? Many thanks Regards, Rana
