Francois Berenger wrote:
When I run coot in order to read the experimental MTZ corresponding to the PDB I am viewing, [snip]I am afraid coot is refining my molecule instead of just displaying the map.
Well, Refmac is - at Coot's request.This usually happens because Coot doesn't detect phases in your MTZ file (i.e. you are using a phasing input file, rather than an output file). Or it could be a bug.
Paul.