Hi everyone: I am trying to reduce my clashscore in Coot using Molprobity. I can get the dots to display alright, but they do not update when I change the rotamer/angles. Here's my .coot (define *probe-command* "/gdata1/deacona/molprobity/molprobity3/bin/linux/probe") (define *reduce-command* "/gdata1/deacona/molprobity/molprobity3/bin/linux/reduce") (set-find-hydrogen-torsion 1) (set-do-probe-dots-on-rotamers-and-chis 1) (set-do-probe-dots-post-refine 1) (set-rotamer-lowest-probability 0.5)
Anything I need to add to the file? Thanks a lot, Alex -- Alexandra M. Deaconescu, Ph.D. Damon Runyon Cancer Research Foundation Postdoctoral Fellow Grigorieff Laboratory Brandeis University Rosenstiel Center 415 South St. MS-029 Waltham, MA 02454 For deliveries: c/o Grigorieff Laboratory Brandeis University 415 South St. Kalman Receiving Dock Waltham, MA 02454
