Hi,
I'm trying to get CCP4 (6.1.2) suite up and running on our shiny new Xserve
cluster.
We're using a NFS shared drive for the software, which is then loaded in to the
user's $PATH using Modules (http://modules.sourceforge.net/).
I had a bit of trouble getting the source code to build in our environment, so
I grabbed the contents of the Mac OS X package & changed some of the variables
as needed.
I found a modulefile on the bulletin board
(http://www.mail-archive.com/[email protected]/msg10981.html), which I
changed a little to suit our setup.
After a few tweaks to the module file, I managed to get ccp4i going on the
cluster.
Unfortunately I don't seem to be able to get the example job (System
Administration -> Configure Interface -> Test -> Running Task) to run.
I'm currently only running on "localhost" (I'll move it to PBS/Torque once I
get it running).
It's complaining it can't open environ.def.
It's not a permissions thing (I changed to 777, still got the error).
I read somewhere that ccp4fyp looks at the $CINCL variable.
This is set in the modulefile as:
CINCL=/software/modules/ccp4/6.1.2/ccp4-6.1.2/include
I've tried symlinking the environ.def (found in
/software/modules/ccp4/6.1.2/ccp4-6.1.2/shared) into the directory, but it
didn't seem to fix things.
I was wondering if anyone might have any ideas?
The job's log looks like this:
#CCP4I VERSION CCP4Interface 2.0.5
#CCP4I SCRIPT LOG import
#CCP4I DATE 09 Dec 2009 16:16:44
#CCP4I USER markbate
#CCP4I PROJECT PROJECT
#CCP4I JOB_ID 4
#CCP4I SCRATCH /tmp/markbate
#CCP4I HOSTNAME orchard.med.monash.edu.au
#CCP4I PID 1586
>>>>>> CCP4 library signal ccp4_general:Cannot open environ.def (Error)
raised in ccp4fyp <<<<<<
na4tomtz: Cannot open environ.def
Times: User: 0.0s System: 0.0s Elapsed: 0:00
***************************************************************************
* Information from CCP4Interface script
***************************************************************************
The program run with command:
/software/modules/ccp4/6.1.2/ccp4-6.1.2/bin/na4tomtz HKLIN
"/software/modules/ccp4/6.1.2/ccp4-6.1.2/share/ccp4i/test_data/rnase_tutorial.na4"
HKLOUT "/tmp/markbate/PROJECT_4_1_mtz.tmp"
has failed with error message
na4tomtz: Cannot open environ.def
***************************************************************************
#CCP4I TERMINATION STATUS 0 " na4tomtz: Cannot open environ.def"
#CCP4I TERMINATION TIME 09 Dec 2009 16:16:44
#CCP4I MESSAGE Task failed
thanks,
mark
