Engin
The PDBe provide a service to plot many different statistical properties
in the PDB
against other properties. The link is below. You can see that there is
an option of RDiff which is the difference between R and
R-Free for all structures that contain both data. Take a look at this
first.
There is a second parameter which you can set to resolution and this
will allow
you to draw a plot that you want.
This will draw a 3D isometric plot which you can scale, and pick data
points to view
particular entries.
http://www.ebi.ac.uk/pdbe-as/pdbestatistics/PDBeStatistics.jsp
Regards
Tom Oldfield
Does anyone already have the PDB-wide R/Rfree gap versus resolution data
(it does not seem that the PDB maintains one)?
Ed.
The friendly people in Uppsala has something here by the name Harry
Plotter: http://xray.bmc.uu.se/gerard/supmat/eds/plotter.html
This might be somewhat dated now.
Engin
