The big problem here is that it doesn't recognise the NOANISOU
keyword. So I presume that you are picking up an old version of
CCP4, or more likely a Coot version of pdbcur. Mmmm the fact that
the banner doesn't report user or date or time suggests a dodgy
version.
I would have to defer to a Mac person on how to set this up
properly. I guess you should do a "which pdbcur" in a terminal
window to confirm the problem, and then fix your PATH somehow.
As Fred says, it is much easier to use "grep -v ANISOU foo.pdb" and I
believe you can do this even on a Mac :)
Martyn
-----Original Message-----
From: CCP4 bulletin board on behalf of Raja Dey
Sent: Sat 10/10/2009 12:37 AM
To: CCP4BB@JISCMAIL.AC.UK
Subject: [ccp4bb] pdbcur failed with the error message 'child process exited
abnormally'
Hello,
I remember PDBCUR was running before updating CCP4 to 6.1.1 in my
macbook. I am trying to remove the aniso U's from a pdb file and I stuck. I
might need some additional setup for this to run. Is there anyone who can tell
what to do? I attached the error message below:
###############################################################
###############################################################
###############################################################
### CCP PROGRAM SUITE: pdbcur ##########
###############################################################
User: Run date: Run time:
Please reference: Collaborative Computational Project, Number 4. 1994.
The CCP4 Suite: Programs for Protein Crystallography. Acta Cryst. D50, 760-763.
as well as any specific reference in the program write-up.
PDB file /Users/rajadey/yong/cns/alternate/final/phenix/may21_1_1_001.pdb has
been read in.
------------------------------------------------------------------------------
Input cards
Data line--- NOANISOU
Unrecognised keyword "NOANISOU"
***************************************************************************
* Information from CCP4Interface script
***************************************************************************
The program run with command: pdbcur XYZIN
"/Users/rajadey/yong/cns/alternate/final/phenix/may21_1_1_001.pdb" XYZOUT
"/Users/rajadey/yong/cns/alternate/final/phenix/may21_pdbset1.pdb"
has failed with error message
child process exited abnormally
************************************************
Thanks... Raja
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