Hi Jason,
I just replied to very similar question to someone in person.
Your options are:
- all about SA omit maps and more:
http://www.phenix-online.org/documentation/autobuild.htm
ask Tom Terwilliger should you have any questions.
- also, a good thing to check (the best actually; this option is
available):
Acta Cryst. (2008). D64, 515-524
Iterative-build OMIT maps: map improvement by iterative model building
and refinement without model bias
- You can use Average Kick Maps (see above slides) with the region in
question omitted. This is available in phenix.refine. Some details about
kick maps are in the slide #20:
http://cci.lbl.gov/~afonine/rsr/afonine_05OCT2009_.pdf
Please let me know if you have any questions or/and need any help.
Cheers,
Pavel.
On 10/6/09 1:21 PM, Jason C Porta wrote:
After searching the documentation and archives, I could not find an
answer to a question regarding Phenix maps.
I am trying to make an Fo-Fc composite omit map of a structure that
has the solvent deleted. I want to create a map using Fo-Fc as the
coefficient and with composite omit phases.
How would I do this in Phenix?
Also, what kind of map is being generated by default? What is the FP
coefficient?
Thanks in advance for any assistance
Sincerly,
Jason Porta
Doctoral Candidate
Dept. Biochemistry & Molecular Biology
University of Nebraska Medical Center
Omaha, NE 68198
(402) 559-5533
