Hi Salameh,
Not sure if you mean a graph of B-factor vs sequence, or a 3D structure
plot.
Either way you can get such a plot using aline
http://crystal.bcs.uwa.edu.au/px/charlie/software/aline/ which can
produce a sequence alignment (or single sequence) coloured by B-factor
(CA, Main, Side or All) and also output a pymol script to use those
colours in pymol on the structure.
Cheers,
Charlie
Salameh, Mohd A., Ph.D. wrote:
Dear All,
I would like to prepare a plot showing the b-factor of only the alpha
carbon and/or the backbone atoms and I wonder if somebody knows a module
or software that I can use, I tried the structure analysis/Temperature
factor analysis module in CCP4 but it plots the average b-factor of all
atoms which I’m not interested in. appreciate your help. Thanks, Mohd
****************************************************
*****Mohd A. Salameh, Ph.D.*
Mayo Clinic Cancer Center
Griffin Cancer Research Building
4500 San Pablo Road
Jacksonville, FL 32224
Tel:(904) 953-0046
Fax:(904) 953-0277
*****salameh.m...@mayo.edu*
****************************************************
--
Charlie Bond
Professorial Fellow
University of Western Australia
School of Biomedical, Biomolecular and Chemical Sciences
M310
35 Stirling Highway
Crawley WA 6009
Australia
charles.b...@uwa.edu.au
+61 8 6488 4406
