Hi Claudia,

There is an option that has not been mentioned yet and has a very obvious 
advantage: CentOS. I am mentioning this because it is identical in 
functionality to Red Hat and therefore it will take the least of your time to 
move to a new system. We like CentOS because it is derived from Red Hat, no 
surprises, no unexpected bugs. And unlike Red Hat, it is completely free and 
you don't need to talk to the Red Hat people (which I found to be completely 
impossible). 

As far as configuration goes, this is what we do:
- Each workstation has a small (100GB or less) drive for the OS. Nothing else.
- We have a network-attached disk farm that holds X-ray images on one share, 
programs on another, and personal data on a third. The advantage is that you 
need to maintain everything only in one place and it does not matter where you 
are working - the data and programs are transparently available to all 
workstations. 
- We have two storage devices, one primary, one backup. All data get backed up 
hourly (X-ray images) or daily (user data) or weekly (Programs). We currently 
have 2TB of space and probably will go to 4TB soon.

You do need to make a careful analysis of what your needs are. We determined at 
the time that network traffic is never a limiting factor. Disk access can be 
somewhat of a limit, say when you have multiple people processing raw X-ray 
images at the same time, but that never happens in our group. So in the end we 
found that our limiting factor was C
PU power and this is where we focused our attention to make an efficient 
system. 

There are slight advantages to each flavor of Linux, but my personal argument 
(as care taker) is that it should take as little time as possible to maintain 
your setup (because maintaining Linux systems is a necessity but not really 
what we wish to do). It should also be very reliable - it should always work 
and you want to make a careful plan to deal with disaster recovery - disks fail 
sooner or later and yes, I have had numerous users who accidentally did 'rm *' 
when they did not mean to do that... That, of course, works equally well in all 
Linux flavors. 

Mark


 


 

-----Original Message-----
From: Claudia Scotti <claudiasco...@hotmail.com>
To: CCP4BB@JISCMAIL.AC.UK
Sent: Mon, Aug 24, 2009 7:30 am
Subject: [ccp4bb] Linux flavour and hard disks













 

Dear List,

 

I'm planning to migrate soon from Red Hat Linux 7.0 on an HP xw6000 workstation 
with dual Xeon processor.

 

Please, any suggestion for the best Linux flavour to get the most out of 
today's crystallographic software? I've seen that both Ubuntu and Fedora are 
quite common.

 

Also I'm in doubt about the following: will it be safer to use two mirror hard 
disks (as I'm doing now) or to use one HD for the software and one for the data?

And, finally, please, what HD size is today most reasonable (big, but still 
fast enough)?

 

Thanks a lot,

 

Claudia=0
A
 

 

 



Claudia Scotti Dipartimento di Medicina Sperimentale Sezione di Patologia 
Generale Universita' di Pavia Piazza Botta, 10 27100 Pavia Italia Tel. 0039 
0382 986335/8/1 Facs 0039 0382 303673





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