I have custom O stereochemistry files that make tweaking DNA very
easy--if you know how to use O.
These days I think it is more stylish to use coot, however. I've never
used it for serious work, but I also think coot has strange and
wonderful abilities that renders the discrimination of biological
polymers a practice of days gone by. I could be wrong on this latter
point.
Let me know if I can help.
James
On Aug 12, 2009, at 9:05 PM, Mike England wrote:
Hi all,
I would like to build the DNA (expected to be much deviated from
standard B-DNA) into the electron density of our DNA-protein complex
at ~3.0 A resolution by adjusting the torsion angles of the
nucleotides.
Any free software to do that? any other suggestions?
thanks in advance.
Mike England
