Dear protein.chemist: Try elbow.builder or phenix.elbow or whatever it is currently called.
It will optimize the geometry. Good.luck Bill.Scott On Tue, July 21, 2009 1:23 pm, protein.chemist protein.chemist wrote: > Dear All, > > What is the best way to find the coordinates of a ligand. > I do not find teh ligand in Pdb.org. I am trying to draw it in prodrug > but > the server is showing error. > Also if I draw it how do I make sure that the geometry is correct. > Thanks, > Mariah > > -- > Mariah Jones > Department of Biochemistry > University of Florida > William G. Scott Contact info: http://chemistry.ucsc.edu/~wgscott/
