Dear Victor,
Are you using python 3 by any chance? Balbes makes use of the popen2
function for running the underlying CCP4 programs but this is replaced
by the subprocess function in python 3. We'll be updating Balbes to
reflect this change but in the mean time you should try installing an
older python such as python 2.6.
Kind regards,
Ronan
Ronan Keegan
CCP4 Group
Victor Alves wrote:
Dear BB
Balbes (run from within CCP4i) gave me one MR solution but stopped with
this error.
I am now using the Balbes WWW server, but could some of you
knowledgeable guys have some ideas of might be going on?
Thanks
Victor Alves
Some info from log file:
BALBES Version is 0.0.1.Mar_31_2008
JOB STARTS AT Mon Jun 8 18:02:06 2009
................
* Information from CCP4Interface script
***************************************************************************
The program run with
command: /usr/local/xtal/ccp4/ccp4-6.1.1/share/balbes/BALBES_0.0.1/bin_py/balbes OUT_ROOTDIR /home/victor/xtalwork/OlpA-M10/2_balbes NAME_ROOT 2_balbes HKLIN /home/victor/xtalwork/OlpA-M10/olpa_m10_scala_I4122.mtz SEQIN /home/victor/xtalwork/OlpA-M10/olpa_m10_info/OlpA_M10.seq XYZOUT /home/victor/xtalwork/OlpA-M10/olpa_m10_balbes_out1.pdb HKLOUT /home/victor/xtalwork/OlpA-M10/olpa_m10_balbes_out1.mtz
has failed with error message
/usr/local/xtal/ccp4/ccp4-6.1.1/share/balbes/BALBES_0.0.1/bin_py/balbes:22:
DeprecationWarning: The popen2 module is deprecated. Use the subprocess module.
import popen2, select, fcntl
***************************************************************************
#CCP4I TERMINATION STATUS 0
"/usr/local/xtal/ccp4/ccp4-6.1.1/share/balbes/BALBES_0.0.1/bin_py/balbes:22:
DeprecationWarning: The popen2 module is deprecated. Use the subprocess module. import
popen2, select, fcntl"
#CCP4I TERMINATION TIME 08 Jun 2009 18:23:47
#CCP4I MESSAGE Task failed
