Dear all I am new to imosflm. Thanks for the online tutorial for imosflm. I am also checking the mosflm 7.0.4 user guide. It is mentioned in the manual that
"From version 6.2.5 onwards, there are some optional questions, based on whether the user wants extra output to help decide between similar solutions. " and "For expert users, iMosflm now has the option of specifying ipmosflm keywords for the very specialised options that are only rarely used and are not yet included in the iMosflm GUI explicitly." How do I turn on those options? Is there any way to do this in the windows version? Thanks. Best, Joe On Thu, Mar 19, 2009 at 7:46 PM, Harry Powell <ha...@mrc-lmb.cam.ac.uk> wrote: > Hi folks > > The real problem here is that the "imosflm" you run by default after > installing the latest CCP4 is a shell script in $CBIN (i.e. where all the > compiled programs are), which doesn't actually set things up properly. This > has been addressed by the guys in Daresbury and the fix will appear in the > next release (after which you should be able to ignore the rest of this > message). > > If, on the other hand, you run the "imosflm" in the directory > $CCP4/ccp4i/imosflm/src, everything should be hunky-dory - you can do this > by setting your PATH environment variable so it finds this script first, > e.g. in tcsh - > > setenv PATH "$CCP4/ccp4i/imosflm/src":$PATH > > _after_ doing the normal source'ing ccp4.setup; then "imosflm" on the > command line should work. > > The other option would be to install imosflm from our web-pages and run > that, but since this is currently the one that ccp4 distribute there's no > obvious advantage to that, other than removing the ambiguity. > > HTH > > On 19 Mar 2009, at 10:03, Williams, MA (Mark) wrote: > >> >> imosflm also takes the command line switch --startdir so you could try >> an alias of >> >> alias imosflm='imosflm --startdir $PWD' >> >> Mark >> >> >> -----Original Message----- >> From: CCP4 bulletin board [mailto:ccp...@jiscmail.ac.uk] On Behalf Of >> William G. Scott >> Sent: 18 March 2009 17:17 >> To: CCP4BB@JISCMAIL.AC.UK >> Subject: Re: [ccp4bb] imosflm STARTDIR >> >> You could try something like this (bash/zsh/sh): >> >> alias imosflm='MOSDIR=${PWD} imosflm' >> >> The single quotes are required for it to do the right thing. >> >> >> Bill >> >> >> >> >> >> On Mar 18, 2009, at 6:49 AM, James Foadi wrote: >> >>> Dear MOSFLM/IMOSFLM people, >>> when I start the new version of imosflm I expect it to dump files and >>> to search all files starting from the current directory. This doesn't >>> seem to be the case. It appears it always starts from MOSDIR. I my >>> imosflm.tcl the line related to STARTDIR is: >>> >>> set STARTDIR [pwd] >>> >>> >>> Perhaps somebody else has written about this, but if this is the case, >> >>> I have missed the thread. >>> >>> Can somebody help me with this? >>> >>> J >>> >>> Dr James Foadi PhD >>> Membrane Protein Laboratory >>> Diamond Light Source Ltd. >>> Diamond House >>> Harwell Science and Innovation Campus >>> Didcot >>> Oxfordshire >>> OX11 0DE >>> United Kingdom >>> >>> >>> office email: james.fo...@diamond.ac.uk alternative email: >>> j.fo...@imperial.ac.uk >>> >>> >>> >> <DIV><FONT size="1" color="gray">This e-mail and any attachments may >> contain confidential, copyright and or privileged material, and are for the >> use of the intended addressee only. If you are not the intended addressee or >> an authorised recipient of the addressee please notify us of receipt by >> returning the e-mail and do not use, copy, retain, distribute or disclose >> the information in or attached to the e-mail. >> Any opinions expressed within this e-mail are those of the individual and >> not necessarily of Diamond Light Source Ltd. >> Diamond Light Source Ltd. cannot guarantee that this e-mail or any >> attachments are free from viruses and we cannot accept liability for any >> damage which you may sustain as a result of software viruses which may be >> transmitted in or with the message. >> Diamond Light Source Limited (company no. 4375679). Registered in England >> and Wales with its registered office at Diamond House, Harwell Science and >> Innovation Campus, Didcot, Oxfordshire, OX11 0DE, United Kingdom >> </FONT></DIV> >> -- >> Scanned by iCritical. > > Harry > -- > Dr Harry Powell, MRC Laboratory of Molecular Biology, MRC Centre, Hills > Road, Cambridge, CB2 0QH >
