Dear List,

 

Sorry for the off-topic.

 

I'm trying to model the 20 residues-long single transmemebrane domain of a 
protein and it is recognised, as expected, to be an alpha-helix by several 
programs. Homology modelling fails for lack of sequence similarity and 
modelling by the HMMSTr-Rosetta models it as a beta-sheet. 

 

Please, would anyone have any suggestions on how to proceed or might please 
someone indicate a more appropriate forum/list for modelling problems? 

 

Many many thanks,

 

Claudia

 

 


Claudia Scotti Dipartimento di Medicina Sperimentale Sezione di Patologia 
Generale Universita' di Pavia Piazza Botta, 10 27100 Pavia Italia Tel. 0039 
0382 986335/8/1 Facs 0039 0382 303673



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