Hi Eric,
You can try the Dundee prodrg server:
http://davapc1.bioch.dundee.ac.uk/prodrg/
Good luck,
Eric
__________________________
Eric Larson, PhD
MSGPP Consortium
Department of Biochemistry
Box 357742
University of Washington
Seattle, WA 98195
On Tue, 3 Mar 2009, Eric Liu wrote:
Hi All,
I downloaded a stausporine PDB file and used elbow to generate the cif file
for my ccp4 refinement. It gave the following error message:
0:00 Bondise Bondise Bondise Bondise Bondise Bondise Bondise Bondise Bondise
B
Failed to determine the bonding of a fragment of the molecule.
PDB file elbow.stau_pdb.001.pdb written.
Bonding file elbow.stau_pdb.001.bonding.py written.
Edit bonding file to reflectALTERNATIVELY
Re-run eLBOW with the --reel option and the molecule wil be loaded
into REEL. Edit the bonds and save the results as "fixed.cif" to
allow eLBOW to load the bonding. the desired bond.
I guess stausporine was quite complicated molecule. How do I rerun the elbow
with reel option? What other programs you can use to generate compound
library file?
Thanks!
Eric
