I have a theory. Automated software updates did not update many
computers correctly, macs in our lab hung at "configuring installation"
and had to be restarted. This phenomenon is observed by many, and
consider yourself lucky, if you haven't (Apple might have fixed it by now).
http://discussions.apple.com/thread.jspa?threadID=1827638&tstart=0
http://www.pcmag.com/article2/0,2817,2337045,00.asp
So, many had to download a software update from Apple's webpage for
manual installation: if you have incidentally downloaded the combo
update, that probably downgrades your X11. That's my theory.
Engin
Randy Read wrote:
Strange ... I just updated to OS 10.5.6, and fully expected to have to
reinstall X11 yet again, but I still have 2.3.1 on my machine after
the update. Odd that it should be inconsistent from one machine to
another.
Randy Read
On 17 Dec 2008, at 22:54, William G. Scott wrote:
Please, we all need to mention this to the Apple people. This is
totally unacceptable.
On Dec 17, 2008, at 2:54 PM, Engin Ozkan wrote:
Yep, this happened because of the latest Mac OS 10.5.6 update. With
the update, my X11 version got downgraded from 2.3.1 to 2.1.5.
Engin
William G. Scott wrote:
Hi Engin:
What do you get in response to the command
otool -L /usr/X11/lib/libXdamage.1.dylib | grep "libXdamage.1.dylib"
You should see
/usr/X11/lib/libXdamage.1.dylib (compatibility version 3.0.0,
current version 3.0.0)
If you don't, update X11 here (free) to at least 2.3.1:
http://xquartz.macosforge.org/trac/wiki
If you do see what I do, then I suspect you need to unset the evil
$DYLD_LIBRARY_PATH variable
Bill
On Dec 17, 2008, at 1:53 PM, Engin Ozkan wrote:
By the way, is anyone experiencing the following problem with
fink-installed coot?
dyld: Library not loaded: /usr/X11/lib/libXdamage.1.dylib
Referenced from: /sw/bin/coot
Reason: Incompatible library version: coot requires version 3.0.0
or later, but libXdamage.1.dylib provides version 2.0.0
[1] Trace/BPT trap coot
Engin
William G. Scott wrote:
More specifically, issue
fink selfupdate-cvs (or fink selfupdate-rsync)
fink install itcl itk iwidgets tdom tkimg tktreectrl
On Dec 17, 2008, at 7:56 AM, Andrzej Lyskowski wrote:
Hi,
I've just upgraded my fink distro and was wondering what else
has to be done concerning configuration in order to make the
iMosflm run on Mac OS.
So far I'm getting the following error:
Error in startup script: unknown namespace in import pattern
"itcl::*"
while executing
"namespace import itcl::*"
(file "/sw/share/xtal/ccp4-6.1.0/ccp4i/imosflm/src/imosflm.tcl"
line 91)
invoked from within
"source $env(IMOSFLM)"
(file "/sw/share/xtal/ccp4-6.1.0/ccp4i/imosflm/imosflm.tcl" line
111)
Regards, Andrzej
------
Randy J. Read
Department of Haematology, University of Cambridge
Cambridge Institute for Medical Research Tel: + 44 1223 336500
Wellcome Trust/MRC Building Fax: + 44 1223 336827
Hills Road E-mail: rj...@cam.ac.uk
Cambridge CB2 0XY, U.K.
www-structmed.cimr.cam.ac.uk
