Hi all, I'm trying to find a website where I can seach a nucleotide database with a relatively short (say 12 bases) in-frame sequence (i.e; -GGA--CAG-etc), and have the results in the same frame (so the resulting hits include regions which code for the same amino acid sequence). I'm sure this can be done without filtering through a ton of redunant hits in a corresponding protein sequence search, but Googling around hasn't come up with anything.
Thanks for any suggestions!
