Priya, We have used a program called CAVER to find channels and cavities in our protein. You can download it and get instructions on its use at http://loschmidt.chemi.muni.cz/caver/
On Mon, Nov 10, 2008 at 10:21 AM, hari jayaram <[EMAIL PROTECTED]> wrote: > Hi Priya , > > I would recommend MOLE from the list kindly compiled by "Jiamudu" on the > CCP4 wikiThe list is available at the link > below<http://strucbio.biologie.uni-konstanz.de/ccp4wiki/index.php/Programs_for_representing_the_surface_of_a_channel_inside_protein> > > > http://strucbio.biologie.uni-konstanz.de/ccp4wiki/index.php/Programs_for_representing_the_surface_of_a_channel_inside_protein > > > Hari > > > On Mon, Nov 10, 2008 at 9:16 AM, Priya Mudgal <[EMAIL PROTECTED]>wrote: > >> Hello All, >> >> Is there any program that can find if there is a channel inside a protein? >> I also would like to know what are the alternative ways to find out a >> channel inside a protein. >> >> Thanks a lot. >> >> Priya >> > > -- Jim Fairman Graduate Research Assistant Department of Biochemistry, Cellular, and Molecular Biology (BCMB) University of Tennessee -- Knoxville 216-368-3337 [EMAIL PROTECTED] [EMAIL PROTECTED]
