At the bottom of the page
http://cmgm.stanford.edu/classes/grasp/
is the code how to colour code hydrophobic residues with GRASP - this is
not a calculation, I'm afraid, just colour coding.
As far as I know GRASP does not have a web-interface. You can install
grasp in a Windows installation within a Virtual Machine (e.g.
virtualbox), so you can run it on your linux (mac) box.
I only installed grasp within Virtualbox without really testing it, so I
am not sure how it would perform graphic wise.
Tim
--
Tim Gruene
Institut fuer anorganische Chemie
Tammannstr. 4
D-37077 Goettingen
GPG Key ID = A46BEE1A
On Thu, 6 Nov 2008, Sebastiano Pasqualato wrote:
Hi all,
I'd love to have a surface representation of my structure in which I
plot the hydrophobic exposed residues.
A bit like an electrostatic potential plotted onto the surface, but
rather than hydrophilic, an hydrophobic one.
Is there a nice web server or a program that does that or you guys
just color hydrophobic amino acids and show the surface?
Thanks in advance,
s
--
Sebastiano Pasqualato, PhD
IFOM-IEO Campus
Dipartimento di Oncologia Sperimentale
Istituto Europeo di Oncologia
via Adamello, 16
20139 - Milano
Italy
tel +39 02 9437 5094
fax +39 02 574 303 310
