Hi Everyone,
Could someone please tell me how to display the evolutionary/
phylogenetic tree of the homologs of my protein of interest.
When I perform a PSI-BLAST search for my protein, I receive about 130
top hits for homologs. The NCBI or EBI tools that I've laid my hands
on seem to only display a 'phylogenetic' tree based on the distance
relationships between the protein sequences and that is not what I am
after. I'd like to find a way to resort the results and redisplay a
tree that say progresses from, say 'yeast to human'. What I have now
is the organisms shown in some random order, say, rat followed by C.
elegans followed by human. I am going bonkers trying to find a simple
way to do what I want.
Thanks and sorry for this Bioinformatics101-type question.
Raji
