Pramod,
PyMOL is sensitive to residue numbering... set retain_order rebuild may help. Cheers, Warren P.S. The PyMOL mailing list can be found at: http://sourceforge.net/mail/?group_id=4546 ________________________________ From: CCP4 bulletin board [mailto:[EMAIL PROTECTED] On Behalf Of pramod madoori Sent: Tuesday, November 04, 2008 5:03 AM To: CCP4BB@JISCMAIL.AC.UK Subject: [ccp4bb] pymol cartoon problem Dear All, I have a simple but unresolved problem when representing one of my structure in cartoon mode using Pymol. One of the bond between Trp and Gly in loop region is represented well in coot as well as other molecular viewing softwares (Rasmol and Molscript). When I tried to represent the same in pymol it shows a break at the same position during cartoon representation and wire representation and not when in lines representation. For your observation I am forwarding the images of those regions from coot (with ED map) and pymol. Does any body had this problem before and any solutions to circumvent this? Thanking you Pramod Kumar
