Alex:
try moving /sw out of the way or not sourcing the /sw/bin/init.(c)sh
script when you start a new shell and see if that makes a difference.
My guess is phenix is using the wrong python (i.e., one in /sw). Fink
won't touch anything outside of /sw (apart from your shell's
environment, if you run the initialization script).
If that solves the problem, just ensure phenix sees /usr/bin/python
first.
Having said that, I use phenix every day, update fink every day, and
have /sw/bin and the head of my path and have not experienced any
problems...
Bill
PS: There is a phenix bb.
On Jul 26, 2008, at 4:50 AM, [EMAIL PROTECTED] wrote:
Dear Phenix Programmers/Users,
after running a 'fink selfupdate' on OS X 10.5.2 (Xquartz 2.2.3) I
am no
longer able to use my Phenix Suite (Ver 1.3 of 26-05-2008) . It
crashes
everytime with obscure (at least to me) error messages (see below).
Does anyone have a clue as to how to proceed and maybe fix it?
Thanks very much in advance!
Alex Berndt
MRC-LMB
[EMAIL PROTECTED]
Python(78825,0xb0185000) malloc: *** mmap(size=4083712) failed (error
code=12)
*** error: can't allocate region
*** set a breakpoint in malloc_error_break to debug
set meta data failed
Traceback (most recent call last):
File "/usr/local/phenix-1.3-rc2/phenix/wxGUI/wxtask.py", line 522, in
OnGoButton
try: self.parent.OnGo()
File "/usr/local/phenix-1.3-rc2/phenix/wxGUI/Dialogs.py", line 470,
in OnGo
gp.RunStrategy()
File "/usr/local/phenix-1.3-rc2/phenix/wxGUI/BMPTaskCanvas.py", line
1170, in RunStrategy
self.RunRemotely()
File "/usr/local/phenix-1.3-rc2/phenix/wxGUI/BMPTaskCanvas.py", line
1293, in RunRemotely
prefs = PDSServerClient.GetPreferences()
File "/usr/local/phenix-1.3-rc2/phenix/phenix/server/
PhenixClient.py",
line 201, in GetPreferences
return self._remote_call('GetPreferences',arg,kw)
File "/usr/local/phenix-1.3-rc2/phenix/phenix/server/
PhenixClient.py",
line 449, in _remote_call
cPickle.dump(all,self.send,1)
File
"/usr/local/phenix-1.3-rc2/build/mac-intel-osx/base/Python.framework/
Versions/2.5/lib/python2.5/socket.py",
line 262, in write
self.flush()
File
"/usr/local/phenix-1.3-rc2/build/mac-intel-osx/base/Python.framework/
Versions/2.5/lib/python2.5/socket.py",
line 249, in flush
self._sock.sendall(buffer)
socket.error: (32, 'Broken pipe'
