Hi Nilofer,

 

We have just published a paper in Acta Cryst D which gives some of this
information. 

Agniswamy J, Joyce MG, Hammer CH, Sun PD. Towards a rational approach
for heavy-atom derivative screening in protein crystallography. Acta
Cryst. (2008). D64, 354-367
<http://sis.niaid.nih.gov/pub_pdf/Agniswamy-et-al-2008.pdf> .

There is also an online server which we have created that will allow you
to judge the most appropriate heavy metal compounds for trials with your
protein. http://sis.niaid.nih.gov/cgi-bin/heavyatom_reactivity.cgi

 

There are a number of other older papers from our group also that are
very informative regarding time and concentration conditions for
soaking. 

 

Sun PD, Radaev S, Kattah M, Generating isomorphous heavy-atom
derivatives by a quick-soak method. Part I: test cases. Acta Cryst.
D58:1092-1098,2002 <http://sis.niaid.nih.gov/pub_pdf/quicksoak_I.pdf> 
Sun PD, Radaev S., Generating isomorphous heavy-atom derivatives by a
quick-soak method. Part II:phasing of new structures. Acta Cryst.
D58:1099-1103,2002 <http://sis.niaid.nih.gov/pub_pdf/quicksoak_II.pdf> 

 

 

All of these papers can be found at
http://sis.niaid.nih.gov/publications.htm

 

Gordon

 

________________________________

From: Nilofer Husain [mailto:[EMAIL PROTECTED] 
Sent: Wednesday, June 11, 2008 11:04 AM
To: CCP4BB@JISCMAIL.AC.UK
Subject: [ccp4bb] Heavy Atom Derivative Site

 

Hi All,

I am looking for a service tool on the web where I can submit my protein
sequence and obtain data information of the Heavy Atom
(concentration,time for soaking etc) that will be compatible with the
sequence I provide.  

One of the known site to me http://hatodas.harima.riken.go.jp/ does not
seem to work.

Any guidance in this regard will be great.

Thanks in Advance
Nilofer Husain

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