Maybe it is point 4 (GFORTRAN_UNBUFFERED_ALL) in http://www.ccp4.ac.uk/problems.php#6.0-ccp4i
Clemens On Thu, Apr 24, 2008 at 04:40:14PM -0400, hari jayaram wrote: > Hello everyone, > It seems that the reason I get "short summaries" in scala is because the > "Show Summary button" is affected by a possible intermitently appearing > change in scala log file formatting. > > When I looked for the text "Summary" in the log file I did find the entire > table -intact. > > SO just for completeness - here is what the "Show summary" gave . And below > this I have the intact summary in the log file. It seems like ccp4i "Show > summary" button for scala log file viewing does not include the entire table > in the window everytime. > > ================================================================================ > > Summary data for Project: cy Crystal: P10_2 Dataset: P10_2 > > Overall InnerShell OuterShell > > Low resolution limit 102.06 102.06 2.11 > High resolution limit 2.00 6.34 2.00 > > Rmerge 0.252 0.112 5.247 > Rmeas (within I+/I-) 0.269 0.118 6.982 > Scala: ** Normal termination ** > Times: User: 403.8s System: 7.8s Elapsed: 6:52 > </pre> > </html> > > ############################################################### > > INTACT summary: > When I do Full log file view : I get the entire summary > > ================================================================================ > > Summary data for Project: cy Crystal: P10_2 Dataset: P10_2 > > Overall InnerShell OuterShell > > Low resolution limit 102.06 102.06 2.11 > High resolution limit 2.00 6.34 2.00 > > Rmerge 0.252 0.112 5.247 > Rmeas (within I+/I-) 0.269 0.118 6.982 > Scala: ** Normal termination ** > Times: User: 403.8s System: 7.8s Elapsed: 6:52 > </pre> > </html> > Rmeas (all I+ & I-) 0.269 0.118 6.982 > Rpim (within I+/I-) 0.091 0.036 4.552 > Rpim (all I+ & I-) 0.091 0.036 4.552 > Fractional partial bias -0.113 -0.122 -1.163 > Total number of observations 1458009 111004 8307 > Total number unique 212719 9864 4327 > Mean((I)/sd(I)) 6.4 16.6 0.3 > Completeness 67.9 99.6 9.4 > Multiplicity 6.9 11.3 1.9 > > > ================================================================================ > > > ############################################################### > > > User: hari Run date: 22/ 4/2008 Run time: 16:39:47 > On Tue, Apr 22, 2008 at 4:14 PM, hari jayaram <[EMAIL PROTECTED]> wrote: > > > For some reason scala does not output the same log file for me everytime. I > > got used to looking at the summary for my scala run, using the Show summary > > button in ccp4i after picking view log file. > > In most cases I get a detailed summary. For this particular dataset , > > despite not changing any parameters in the GUI I get a very shortened > > summary. > > Is it that I clicked some button by mistake, that shortens the log-summary. > > > > I am using the latest version of ccp4 6.2.2 and fink installed ccp4 on OSX > > Leopard. > > I am reproducing the short and long summary here. > > > > Thanks for your help > > Hari Jayaram > > > > > > BAD Case: > > > > Summary data for Project: cy Crystal: P10_2 Dataset: P10_2 > > > > Overall InnerShell OuterShell > > > > Low resolution limit 102.06 102.06 2.11 > > High resolution limit 2.00 6.34 2.00 > > > > Rmerge 0.252 0.112 5.247 > > Rmeas (within I+/I-) 0.269 0.118 6.982 > > Scala: ** Normal termination ** > > Times: User: 404.5s System: 8.0s Elapsed: 6:53 > > </pre> > > </html> > > > > GOOD case: > > > > Summary data for Project: cy Crystal: p10_1 Dataset: p10_1 > > > > Overall InnerShell OuterShell > > > > Low resolution limit 102.60 102.60 2.12 > > High resolution limit 2.01 6.35 2.01 > > > > Rmerge 0.164 0.053 3.283 > > Rmeas (within I+/I-) 0.183 0.058 4.363 > > Rmeas (all I+ & I-) 0.183 0.058 4.363 > > Rpim (within I+/I-) 0.080 0.021 2.835 > > Rpim (all I+ & I-) 0.080 0.021 2.835 > > Fractional partial bias -0.022 -0.018 -0.072 > > Total number of observations 835420 73666 4479 > > Total number unique 196397 9701 3022 > > Mean((I)/sd(I)) 2.2 4.2 0.2 > > Completeness 64.3 99.8 6.9 > > Multiplicity 4.3 7.6 1.5 > > > > > > > > ================================================================================ > > > > > > > > > > > > > > > > > > > > > > > > > > -- *************************************************************** * Clemens Vonrhein, Ph.D. vonrhein AT GlobalPhasing DOT com * * Global Phasing Ltd. * Sheraton House, Castle Park * Cambridge CB3 0AX, UK *-------------------------------------------------------------- * BUSTER Development Group (http://www.globalphasing.com) ***************************************************************
