Hi Bill,
Thanks a lot for your advice. Coot now installs and runs, however, I
do get some warnings;
** (coot:20738): WARNING **: Error loading pixmap file: /sw/share/coot/
pixmaps/connect-to-ccp4.svg
** (coot:20738): WARNING **: Error loading pixmap file: /sw/share/coot/
pixmaps/connect-to-oca.svg
** (coot:20738): WARNING **: Error loading pixmap file: /sw/share/coot/
pixmaps/connect-to-usf.svg
** (coot:20738): WARNING **: Error loading pixmap file: /sw/share/coot/
pixmaps/merge-molecules.svg
** (coot:20738): WARNING **: Error loading pixmap file: /sw/share/coot/
pixmaps/renumber-residues.svg
** (coot:20738): WARNING **: Error loading pixmap file: /sw/share/coot/
pixmaps/change-chain-id.svg
** (coot:20738): WARNING **: Error loading pixmap file: /sw/share/coot/
pixmaps/calculate-ghosts.svg
** (coot:20738): WARNING **: Error loading pixmap file: /sw/share/coot/
pixmaps/generic-display-objects.svg
** (coot:20738): WARNING **: Error loading pixmap file: /sw/share/coot/
pixmaps/add-peptide-1.svg
** (coot:20738): WARNING **: Error loading pixmap file: /sw/share/coot/
pixmaps/stereo-view.svg
** (coot:20738): WARNING **: Error loading pixmap file: /sw/share/coot/
pixmaps/kleywegt.svg
** (coot:20738): WARNING **: Error loading pixmap file: /sw/share/coot/
pixmaps/unknown-blob.svg
** (coot:20738): WARNING **: Error loading pixmap file: /sw/share/coot/
pixmaps/diff-map.svg
** (coot:20738): WARNING **: Error loading pixmap file: /sw/share/coot/
pixmaps/water-drop.svg
** (coot:20738): WARNING **: Error loading pixmap file: /sw/share/coot/
pixmaps/water-diff-map.svg
** (coot:20738): WARNING **: Error loading pixmap file: /sw/share/coot/
pixmaps/geom.svg
** (coot:20738): WARNING **: Error loading pixmap file: /sw/share/coot/
pixmaps/peptide-omega.svg
** (coot:20738): WARNING **: Error loading pixmap file: /sw/share/coot/
pixmaps/temperature.svg
** (coot:20738): WARNING **: Error loading pixmap file: /sw/share/coot/
pixmaps/gln-asn-b-factors.svg
** (coot:20738): WARNING **: Error loading pixmap file: /sw/share/coot/
pixmaps/rotamers.svg
** (coot:20738): WARNING **: Error loading pixmap file: /sw/share/coot/
pixmaps/density-fit.svg
** (coot:20738): WARNING **: Error loading pixmap file: /sw/share/coot/
pixmaps/probe-clash.svg
** (coot:20738): WARNING **: Error loading pixmap file: /sw/share/coot/
pixmaps/scroll-wheel.svg
** (coot:20738): WARNING **: Error loading pixmap file: /sw/share/coot/
pixmaps/refine-1.svg
** (coot:20738): WARNING **: Error loading pixmap file: /sw/share/coot/
pixmaps/regularize-1.svg
** (coot:20738): WARNING **: Error loading pixmap file: /sw/share/coot/
pixmaps/anchor.svg
** (coot:20738): WARNING **: Error loading pixmap file: /sw/share/coot/
pixmaps/rigid-body.svg
** (coot:20738): WARNING **: Error loading pixmap file: /sw/share/coot/
pixmaps/rtz.svg
** (coot:20738): WARNING **: Error loading pixmap file: /sw/share/coot/
pixmaps/auto-fit-rotamer.svg
** (coot:20738): WARNING **: Error loading pixmap file: /sw/share/coot/
pixmaps/rotamers.svg
** (coot:20738): WARNING **: Error loading pixmap file: /sw/share/coot/
pixmaps/edit-chi.svg
** (coot:20738): WARNING **: Error loading pixmap file: /sw/share/coot/
pixmaps/flip-peptide.svg
** (coot:20738): WARNING **: Error loading pixmap file: /sw/share/coot/
pixmaps/mutate-auto-fit.svg
** (coot:20738): WARNING **: Error loading pixmap file: /sw/share/coot/
pixmaps/mutate.svg
** (coot:20738): WARNING **: Error loading pixmap file: /sw/share/coot/
pixmaps/add-water.svg
These files do seem to be in the /sw/share/coot/pixmaps/ directory,
and load in other programs.
Do you know what might be the matter?
Thanks! and all the best,
--Buz
On Apr 17, 2008, at 5:03 PM, William Scott wrote:
Hi Buz:
You need to upgrade to the current (three day old) X11, available
from here:
http://trac.macosforge.org/projects/xquartz
It fixes a lot of bugs, so the pain you are being subjected to now
will be worth it.
Bill
William G. Scott
Contact info:
http://chemistry.ucsc.edu/~wgscott/
On Apr 17, 2008, at 1:48 PM, Buz Barstow wrote:
Hi Bill,
Thanks for your advice! Ruby now installs on my machine, as does
Coot (which is what I really wanted).
Unfortunately, coot is unhappy with my X11 install. When I run
coot, I get the following error:
dyld: Library not loaded: /usr/X11/lib/libfontconfig.1.dylib
Referenced from: /sw/bin/coot
Reason: Incompatible library version: coot requires version 5.0.0
or later, but libfontconfig.1.dylib provides version 3.0.0
Trace/BPT trap
I'm using X11 version 2.1.1 (xorg-server 1.3.0-apple5) - the
version that came with OS X 10.5.2. Is there a way to get coot to
look at an updated version of the library.
Thanks! and all the best,
--Buz
On Apr 17, 2008, at 3:39 PM, William Scott wrote:
Dear Chris et al,
My guess is something needs ruby built as a build-time dependency,
but coot doesn't require it. In any case, I've got the latest
version of ruby built and anyone who needs it can download it from
one of my servers as described on this page:
http://tinyurl.com/h2lzq
That saves you the overhead of compiling stuff. You can just
download precompiled debian packages and have fink unpack them for
you.
HTH,
Bill
William G. Scott
Contact info:
http://chemistry.ucsc.edu/~wgscott/
On Apr 17, 2008, at 11:51 AM, Chris Richardson wrote:
On 17 Apr 2008, at 6:07 PM, Buz Barstow wrote:
I'm having trouble installing coot on MacOSX 10.5.2 on my
MacBook Pro (Core Duo model).
I would like to install coot using fink, but am getting stuck
when it comes to installing ruby. Has anyone else experienced
this problem?
I've spent the afternoon doing a clean rebuild of a fink
installation on an iMac (Core 2 Duo) running Tiger 10.4.11, and
the process also died at updating ruby. Poking around on Google
yields several people with the same problem, but none with a
solution. The fink-devel mailing list saw the problem yesterday,
so a fix may be forthcoming soon.
Regards,
Chris
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