On Tuesday 25 September 2007 14:22, Ibrahim M. Moustafa wrote: > > I'm looking for a webserver that can take the alignment and > produce a nice figure with the alignment annotated with sec. structure on top,
I use TeXShade <http://www.ctan.org/tex-archive/help/Catalogue/entries/texshade.html> But it's a TeX package, not a web server. Might you be thinking of <http://wavis.img.cas.cz/> ? -Ethan > and draw boxes around conserved residues. Long time ago I had used > a server doing exactly what I described; unfortunately, I lost the information > > of that server from my computer and the memory could not help to > find it in google. I'm sure there are many tools, but I'm interested > in an easy-to-use one. > > Something to plugin the sequence/alignment and get a pretty alignment > figure. > > I'd be appreciating if someone out there could point me to that > server or similar ones. > > I looked at several tools available online in Expasy but none is > doing what I did before. > > thanks in advance for your help. > > Ibrahim > > > > > ---------------------------------------------------------------------------------------------------------- > Ibrahim M. Moustafa, Ph.D. > Biochemistry and Molecular Biology Dept. > 201 Althouse Lab., University Park > Pennsylvania State University, PA16802 > > Tel. (814)863-8703 > Fax. (814)865-7927 > ---------------------------------------------------------------------------------------------------------- > > -- Ethan A Merritt Courier Deliveries: 1959 NE Pacific Dept of Biochemistry Health Sciences Building University of Washington - Seattle WA 98195-7742
