Re: [ccp4bb] How to obtain specific chain protein structures without ligand?

[Eleanor Dodson]

You would have to edit the command script for PDBSET

(From GUI - Run and View com file, then modify it..)

There are options to select CHAIN A and protein only. etc etc

Eleanor

Antony Oliver wrote:

You could simply hand-edit the PDB file to remove the offending ligand.

Regards,

Tony.



   Hi, all

I want to write a specific chain structures(protein). I tried PDBSET and

   biopython but they couldn't deal with some exceptional case.
   For example, some pdb files contain both protein structure and ligand
   structure in a given chain ID(e.g. 'A' or ' ')

How can I obtain full chain structures without ligand structure by other

   methods than clicking one by one at any website.

   Thanks in advance.

   Best,
   Hyunchul Kim