Jhon Thomas wrote:
Hi all
Dear Jhon,
Thanks for your email and apologies for the problem. Fedora 6 was not
available to us when we built the packages, but hopefully we can sort
you problem out. It certainly will be supported fully in future releases.
[EMAIL PROTECTED] ccp4]$ ./ccp4mg-1.0/bin/ccp4mg
Traceback (most recent call last):
File "<stdin>", line 2, in ?
File "/usr/progs/ccp4/ccp4mg- 1.0/python/ui/history.py", line 16, in ?
from display_table import DT
File "/usr/progs/ccp4/ccp4mg-1.0/python/ui/display_table.py", line 16,
in ?
from mmdb import *
File "/usr/progs/ccp4/ccp4mg- 1.0/lib/mmdb.py", line 4, in ?
import _mmdb
ImportError: /usr/progs/ccp4/./ccp4mg-1.0/bin/../lib/libmmdb.so: cannot
restore segment prot after reloc: Permission denied
This is a problem related to the SE (Security Enhanced) Linux module in
the operating system. Binaries must be "blessed" or given permission to
run. As root you need to type (all on one line):
find /usr/progs/ccp4/ccp4mg- 1.0/ -name '*.so*' -exec chcon -t
texrel_shlib_t {} \;
Traceback (most recent call last):
File "/usr/progs/ccp4/./ccp4mg-1.0/bin/..//python/ui/ui.py", line 55, in ?
from opengl import *
File "/usr/progs/ccp4/ccp4mg-1.0/lib/opengl.py", line 4, in ?
import _opengl
ImportError: /usr/progs/ccp4/./ccp4mg- 1.0/bin/../lib/libglut.so.3:
undefined symbol: glXBindChannelToWindowSGIX
This looks like a problem with the libglut that we ship with ccp4mg
being incompatible with the one expected to be on Fedora 6. You could
try to install the libglut package on your system and delete the one in
ccp4mg-10/lib. However I am not sure if this is the best course of
action. Installing the standalone package from
http://www.ysbl.york.ac.uk/~ccp4mg/download/index.html as I think you do
below may be a better option.
and again, when i tried to install this separately:
I get the massage like this:
[EMAIL PROTECTED] ./ccp4mg-1.0/bin/ccp4mg
./ccp4mg-1.0/bin/ccp4mg: line 205:
/home/thomas/./ccp4mg-1.0/bin/..//pythondist//bin/python: cannot execute
binary file
./ccp4mg-1.0/bin/ccp4mg: line 245:
/home/thomas/./ccp4mg-1.0/bin/..//pythondist//bin/python: cannot execute
binary file
./ccp4mg-1.0/bin/ccp4mg: line 285:
/home/thomas/./ccp4mg-1.0/bin/..//pythondist//bin/python: cannot execute
binary file
Is any one have this kind of experience?
please give the suggesstions.
This is slightly wierd. What output do the commands:
file /home/thomas/ccp4mg-1.0/bin/pythondist/bin/python
ldd /home/thomas/ccp4mg-1.0/bin/pythondist/bin/python
give?
Best Wishes,
Stuart McNicholas
