Hi Tracy -
Thats actually a warning message (sorry to use the word error
there ...) and it should not stop the program from running.
I believe, you dont have to take any action.
If the procedure however stops indeed, please send us detailed log
files and more complete output to try and solve it.
Thanks for the bug report -
Tassos
On 17 Jul 2007, at 19:48, Tracy Arakaki wrote:
Hello,
I just tried running the new version of ARP/wARP (Classic) and got
the following error message:
:1: parser error : Document is empty
XMLOutputFilename = 'snow_log.xml'
^
snow - WRNG* : CConfig::processStream File isn't in proper XML format
Any ideas on how to fix this so that ARP/wARP will successfully run?
Thanks,
-Tracy
====================================
Tracy Arakaki, Ph.D.
University of Washington
Dept. of Biochemistry
MS 357742
Seattle, WA 98195-7742
====================================
On Mon, 16 Jul 2007, Victor Lamzin wrote:
Dear all,
We are happy to announce the release of ARP/wARP version 7.0
Please visit http://www.arp-warp.org for details and software
download.
The major improvements are:
• A new module for ultra-fast low resolution tracing of helical
and beta-stranded fragments at resolution down to 4.5 A.
• Improved and faster chain tracing, working at lower resolution
than before, for both 'Classic' and 'flex-wARP' modules.
• Flex-wARP, a control system which automatically defines the
sequence of the steps to be taken during iterative model building.
• Considerably advanced automated ligand building with ~80%
success in site identification and ~70% in ligand constructions.
• An option for ‘cocktail screening’; the most likely ligand is
identified and built from a list of potential compounds.
• Improved fragment sequence docking with empirical targets
extracted from experimental datasets.
• A validation program ElAl (originated from G. Kleywegt) based on
statistical density targets from the EDS implemented in flex-wARP.
• A standalone module for side chain building and refinement.
• A module for building loops between fragments implemented in
flex-wARP and provided standalone.
• The solvent building module with incremental improvements as a
dedicated module.
• Remote job submission at the EMBL Hamburg cluster directly from
the web in addition to the CCP4i GUI.
• Command-line job submission for most ARP/wARP tasks.
• ARP/wARP is now running on Mac powerpc, Mac Intel, some flavours
of Linuxes (i32 and 64-bit ) as well as alpha-Tru64 and mips-IRIX64.
Victor and Tassos on behalf of the ARP/wARP developers' team.
