Dear all,
I got some strange problems with the refmac. The whole ccp4 package was
newly downloaded to my laptop( window, off-line installation),including
ccp4mg and coot.
First, refmac randomly fails to complete task( as shown as below).
"randomly" means it failed one time, but will run through and complete the
task the other time, I have got no control over it.
Second, Even after the tasks are finished and I see the output pdb and map
files, (so far I have run SFcheck and refmac,) it does not show" finished"
but "running". It only switches to "finished" after I shut down ccp4 and
restart.
Overally ccp4 works on my laptop, but the unstable performance is kind of
nagging me down. If you could offer your suggestions, I appreciate it very
much.
river-lake fang
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CGMAT cycle number = 3
$TEXT:Warning: $$ comment $$
WARNING: CCPOPN Logical name C:\Ccp4Temp\\refmac5_temp1.03096_REFSCR_1 has
no associated file name
$$
Open failed: Unit: 8, File: C:\Ccp4Temp\\refmac5_temp1.03096_REFSCR_1
(logical: C:\Ccp4Temp\\refmac5_temp1.03096_REFSCR_1)
Refmac_5.2.0019: Open failed: File:
C:\Ccp4Temp\\refmac5_temp1.03096_REFSCR_1
Times: User: 0.0s System: 0.0s Elapsed: 0:58
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***************************************************************************
* Information from CCP4Interface script
***************************************************************************
The program run with command: refmac5 XYZIN
"C:/Ccp4Temp/M5/new_m5_refmac1-coot-2.pdb" XYZOUT
"C:/Ccp4Temp/m5_14_4_pdb_1.tmp" HKLIN "C:/Ccp4Temp/M5/m5_3_1_.mtz" HKLOUT
"C:/Ccp4Temp/m5_14_6_mtz_1.tmp" LIBIN "C:/Ccp4Temp/M5/m5_3_50_lib.cif"
LIBOUT "C:/Ccp4Temp/M5/m5_14_lib.cif"
has failed with error message
Last system error message: Permission denied
Refmac_5.2.0019: Open failed: File:
C:\Ccp4Temp\\refmac5_temp1.03096_REFSCR_1
***************************************************************************
#CCP4I TERMINATION STATUS 0 Last system error message: Permission denied
Refmac_5.2.0019: Open failed: File:
C:\Ccp4Temp\\refmac5_temp1.03096_REFSCR_1
#CCP4I TERMINATION TIME 20 May 2007 19:35:09
#CCP4I MESSAGE Task failed
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