What about giving the correctly positioned partial solution,
and fixed angles/translation of 0,0,0,0,0,0 for that part?
Jay Thompson wrote:
Hi,
I have a question with molecular replacement using Phaser. I'm trying
to solve a complex and I have a partial molecular replacement solution
solved using another program. This solution is correct and makes up
~50% of the entire complex. I wanted to fix this solution and search
for another small fragment of the complex using Phaser. I've been
reading the Phaser manual and it seems that I cannot input a pdb with
this partial solution and tell the program to fix this molecule. It
seems that fixed solutions can be only input by putting in its Euler
angles and fractional coordinate translations. Is this correct that I
cannot input a pdb and fix it? If I cannot do this, then is there a
quick way to identify the euler angles and coordinate translations for
Phaser.
Thanks a lot!!
Jay
