Tim & Yanming,
Our first suggestion is to try the latest version (1.0) - a few startup
issues were fixed between the two versions.
Normally I would encourage you to use the python version distributed
with ccp4mg. The C++/Python interface was built against a particular
version of Python and probably will not work with others.
Liz
Tim Grune wrote:
Hi Yanming,
it looks like ccp4mg looks for python in a specific path within the
ccp4mg.
Edit the script ccp4mg (you find out where it is with 'which ccp4mg').
Look at the very end of that file
for where python is called (probably with some arguments). Make sure
it says only 'python', not anything like
'/usr/local/ccp4/ccp4mg-0.12.1/bin/..//pythondist/bin/python'. Then
ccp4mg will use the python of your system. This works for me and
ccp4mg does not need its own python installation.
Maybe the ccp4mg-developers may want to comment on whether this is a
bad idea and may have a negative influence on ccp4mg's performance?
Tim
-----Original Message-----
From: Yanming Zhang <[EMAIL PROTECTED]>
To: Tim Grune <[EMAIL PROTECTED]>
Date: Wed, 16 May 2007 01:47:08 -0400 (EDT)
Subject: Re: [ccp4bb] ccp4mg can't start
Dear Tim,
Thanks for your help. python 2.4.2 is the version. Following is
the output
of ccp4mg -dbx:
GNU gdb Red Hat Linux (6.3.0.0-1.132.EL4rh)
Copyright 2004 Free Software Foundation, Inc.
GDB is free software, covered by the GNU General Public License,
and you
are
welcome to change it and/or distribute copies of it under certain
conditions.
Type "show copying" to see the conditions.
There is absolutely no warranty for GDB. Type "show warranty" for
details.
This GDB was configured as
"i386-redhat-linux-gnu".../usr/local/ccp4/ccp4mg-0.12.1/bin/..//pythondist/bin/python:
No such file or directory.
(gdb) Starting program:
/usr/local/ccp4/ccp4mg-0.12.1/bin/..//python/ui/ui.py -debug opengl
command
No executable file specified.
Use the "file" or "exec-file" command.
(gdb) No stack.
(gdb) No symbol table is loaded. Use the "file" command
Any suggestion?
Thanks
On Wed, 16 May 2007, Tim Grune wrote:
> Hi Yanming,
>
> which version of python is running on your system(python -V)?
Maybe it is too
> old?
> Otherwise, does 'ccp4mg -dbx' produce any more output?
>
> On Wednesday 16 May 2007 11:20, you wrote:
>> Dear Tim,
>> I checked the two files, Both are empty.
>> Linux distribution: 2.6.9-42.ELsm
>>
>> Thanks
>> Yanming
>>
>> On Wed, 16 May 2007, Tim Grune wrote:
>>> Could you send the contents of the files
>>> /home/yzhang/.CCP4MG/ccp4mg_stdout.txt
>>> and
>>> /home/yzhang/.CCP4MG/ccp4mg_stderr.txt
>>> What Linux distribution are you using?
>>>
>>> Tim
>>>
>>> On Wednesday 16 May 2007 10:31, Yanming Zhang wrote:
>>>> Dear All,
>>>> lately I have a fantacy toward ccp4mg. But either from
>>>> ccp4i or typing 'ccp4mg' directly from the prompt(Linux),
>>>> I got the following error message:
>>>>
>>>> Loading fonts..
>>>> ...DONE
>>>> Starting graphics thread..
>>>> ...DONE
>>>> Parsing command line..
>>>> ...DONE
>>>> Redirecting output to /home/yzhang/.CCP4MG/ccp4mg_stdout.txt
>>>> Redirecting errors to /home/yzhang/.CCP4MG/ccp4mg_stderr.txt
>>>> Started at Fri May 16 09:16:59 2003
>>>> /usr/local/ccp4/ccp4mg-0.12.1/bin/ccp4mg: line 281: 10773 Killed
>>>> python $CCP4_MG/python/ui/ui.py $*
>>>>
>>>> Any quick remedy?
>>>> Thanks
>>>> Yanming
>>>
>>> --
>>> Tim Grune
>>> Australian Synchrotron
>>> 800 Blackburn Road
>>> Clayton, VIC 3168
>>> Australia
>
> --
> Tim Grune
> Australian Synchrotron
> 800 Blackburn Road
> Clayton, VIC 3168
> Australia
>
